I was reconfiguring autofs and when I tried to rmdir one of the directories, I got "Device or resource busy"... ok, so let's just run 'fuser -v /dir'. To my surprise, it returned nothing. Alright, back to good old, lsof and..... nothing.
Strange. Looks like a bug.
So, I had to un-reconfigure autofs and put everything back the way it was. Once I did that, I restarted autofs and fuser -v correctly identified the rogue dir as being held open by autofs.
Now, all I did was, shutdown autofs, removed the rogue dir and reconfigure autofs once again.
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